Package: malan
Type: Package
Title: MAle Lineage ANalysis
Version: 1.0.4
Authors@R: c(
    person(given = "Mikkel Meyer", family = "Andersen", 
        email = "mikl@math.aau.dk", role = c("aut", "cre"))
  )
Author: Mikkel Meyer Andersen [aut, cre]
Maintainer: Mikkel Meyer Andersen <mikl@math.aau.dk>
Description: MAle Lineage ANalysis by simulating genealogies backwards
        and imposing short tandem repeats (STR) mutations forwards.
        Intended for forensic Y chromosomal STR (Y-STR) haplotype
        analyses. Numerous analyses are possible, e.g. number of
        matches and meiotic distance to matches. Refer to papers
        mentioned in citation("malan") (DOI's:
        <doi:10.1371/journal.pgen.1007028>, <doi:10.21105/joss.00684>
        and <doi:10.1016/j.fsigen.2018.10.004>).
License: GPL-2 | file LICENSE
Imports: Rcpp (>= 0.12.7), RcppProgress (>= 0.2.1), RcppArmadillo (>=
        0.9.880.1.0), igraph (>= 1.0.1), tibble (>= 1.1), magrittr (>=
        1.5), methods
Depends: R (>= 3.6), dplyr (>= 0.7.3), tidygraph (>= 1.0.0.9999)
LinkingTo: Rcpp, RcppArmadillo, RcppProgress
Suggests: knitr, rmarkdown, testthat, ggraph, dirmult, Rmpfr
BugReports: https://github.com/mikldk/malan/issues
URL: https://mikldk.github.io/malan/
VignetteBuilder: knitr
Encoding: UTF-8
LazyData: true
Roxygen: list(markdown = TRUE, roclets = c("rd", "collate",
        "namespace"))
RoxygenNote: 7.3.1
Config/pak/sysreqs: libglpk-dev libicu-dev libxml2-dev
Repository: https://mikldk.r-universe.dev
Date/Publication: 2025-08-19 21:17:53 UTC
RemoteUrl: https://github.com/mikldk/malan
RemoteRef: HEAD
RemoteSha: 7c58e462af18e21bd093fc79c6eca803ebec2692
NeedsCompilation: yes
Packaged: 2026-06-19 08:43:03 UTC; root