Package: DNAtools 0.2-5

DNAtools: Tools for Analysing Forensic Genetic DNA Data

Computationally efficient tools for comparing all pairs of profiles in a DNA database. The expectation and covariance of the summary statistic is implemented for fast computing. Routines for estimating proportions of close related individuals are available. The use of wildcards (also called F- designation) is implemented. Dedicated functions ease plotting the results. See Tvedebrink et al. (2012) <doi:10.1016/j.fsigen.2011.08.001>. Compute the distribution of the numbers of alleles in DNA mixtures. See Tvedebrink (2013) <doi:10.1016/j.fsigss.2013.10.142>.

Authors:Torben Tvedebrink [aut], James Curran [aut], Mikkel Meyer Andersen [aut, cre]

DNAtools_0.2-5.tar.gz
DNAtools_0.2-5.zip(r-4.7-x86_64)DNAtools_0.2-5.zip(r-4.6-x86_64)DNAtools_0.2-5.zip(r-4.5-x86_64)
DNAtools_0.2-5.tgz(r-4.6-x86_64)DNAtools_0.2-5.tgz(r-4.6-arm64)DNAtools_0.2-5.tgz(r-4.5-x86_64)DNAtools_0.2-5.tgz(r-4.5-arm64)
DNAtools_0.2-5.tar.gz(r-4.7-arm64)DNAtools_0.2-5.tar.gz(r-4.7-x86_64)DNAtools_0.2-5.tar.gz(r-4.6-arm64)DNAtools_0.2-5.tar.gz(r-4.6-x86_64)
DNAtools_0.2-5.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
DNAtools/json (API)

# Install 'DNAtools' in R:
install.packages('DNAtools', repos = c('https://mikldk.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/mikldk/dnatools/issues

Uses libs:
  • c++– GNU Standard C++ Library v3
Datasets:
  • dbExample - Simulated database with 1,000 individuals

On CRAN:

Conda:

cpp

6.06 score 32 scripts 474 downloads 8 mentions 18 exports 15 dependencies

Last updated from:efcdc92b67. Checks:13 OK. Indexed: yes.

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macos-release-arm64OK151
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windows-releaseOK182
windows-oldrelOK150
wasm-releaseOK170

Exports:convolvedbCollapsedbComparedbExpectdbSimulatedbVarianceestimatePDfreqEstoptim.relatednesspContribpContrib_locusplot.dbcompareplot.dbOptimPnm_allPnm_locusprint.dbcompareprint.dbOptimsimAlleleFreqs

Dependencies:codetoolsdigestfuturefuture.applyglobalslistenvmulticoolnumDerivparallellyRcppRcppArmadilloRcppParallelRcppProgressRsolnptruncnorm

Empirical testing of DNA match probabilities
Introduction | DNA evidence, matches and partial matches | DNA database comparison exercises | The birthday problem | The pairwise profile matching probability | Using the package DNAtools | References
Rendered fromdb_vignette.Rmdusingknitr::rmarkdown

Last update: 2022-03-17
Started: 2019-12-09

STR markers in forensic genetics
Introduction | Matches and partial matches | The DNAtools package | Using the package DNAtools | References
Rendered fromdna_vignette.Rmdusingknitr::rmarkdown

Last update: 2022-03-17
Started: 2019-12-09

On the exact distribution of the numbers of alleles in DNA mixtures
Introduction | DNA mixtures | Single locus | Accumulating over loci | $\theta$-correction | Summing over loci | Posterior probability for the number of contributors
Rendered fromnoa_vignette.Rmdusingknitr::rmarkdown

Last update: 2020-03-01
Started: 2019-12-09