Package: DNAtools 0.2-4.9001

DNAtools: Tools for Analysing Forensic Genetic DNA Data

Computationally efficient tools for comparing all pairs of profiles in a DNA database. The expectation and covariance of the summary statistic is implemented for fast computing. Routines for estimating proportions of close related individuals are available. The use of wildcards (also called F- designation) is implemented. Dedicated functions ease plotting the results. See Tvedebrink et al. (2012) <doi:10.1016/j.fsigen.2011.08.001>. Compute the distribution of the numbers of alleles in DNA mixtures. See Tvedebrink (2013) <doi:10.1016/j.fsigss.2013.10.142>.

Authors:Torben Tvedebrink [aut], James Curran [aut], Mikkel Meyer Andersen [aut, cre]

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DNAtools.pdf |DNAtools.html✨
DNAtools/json (API)
NEWS

# Install 'DNAtools' in R:
install.packages('DNAtools', repos = c('https://mikldk.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/mikldk/dnatools/issues

Uses libs:
  • c++– GNU Standard C++ Library v3
Datasets:
  • dbExample - Simulated database with 1,000 individuals

On CRAN:

Conda-Forge:

cpp

6.00 score 28 scripts 337 downloads 8 mentions 18 exports 6 dependencies

Last updated 2 years agofrom:2205017e9e. Checks:1 OK, 10 NOTE. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKFeb 05 2025
R-4.5-win-x86_64NOTEFeb 05 2025
R-4.5-mac-x86_64NOTEFeb 05 2025
R-4.5-mac-aarch64NOTEFeb 05 2025
R-4.5-linux-x86_64NOTEFeb 05 2025
R-4.4-win-x86_64NOTEFeb 05 2025
R-4.4-mac-x86_64NOTEFeb 05 2025
R-4.4-mac-aarch64NOTEFeb 05 2025
R-4.3-win-x86_64NOTEFeb 05 2025
R-4.3-mac-x86_64NOTEFeb 05 2025
R-4.3-mac-aarch64NOTEFeb 05 2025

Exports:convolvedbCollapsedbComparedbExpectdbSimulatedbVarianceestimatePDfreqEstoptim.relatednesspContribpContrib_locusplot.dbcompareplot.dbOptimPnm_allPnm_locusprint.dbcompareprint.dbOptimsimAlleleFreqs

Dependencies:multicoolRcppRcppParallelRcppProgressRsolnptruncnorm

Empirical testing of DNA match probabilities

Mikkel Meyer Andersen, James Michael Curran and Torben Tvedebrink

Rendered fromdb_vignette.Rmdusingknitr::rmarkdownon Feb 05 2025.

Last update: 2022-03-17
Started: 2019-12-09

STR markers in forensic genetics

Mikkel Meyer Andersen, James Michael Curran and Torben Tvedebrink

Rendered fromdna_vignette.Rmdusingknitr::rmarkdownon Feb 05 2025.

Last update: 2022-03-17
Started: 2019-12-09

On the exact distribution of the numbers of alleles in DNA mixtures

Mikkel Meyer Andersen, James Michael Curran and Torben Tvedebrink

Rendered fromnoa_vignette.Rmdusingknitr::rmarkdownon Feb 05 2025.

Last update: 2020-03-01
Started: 2019-12-09