malan - MAle Lineage ANalysis
MAle Lineage ANalysis by simulating genealogies backwards and imposing short tandem repeats (STR) mutations forwards. Intended for forensic Y chromosomal STR (Y-STR) haplotype analyses. Numerous analyses are possible, e.g. number of matches and meiotic distance to matches. Refer to papers mentioned in citation("malan") (DOI's: <doi:10.1371/journal.pgen.1007028>, <doi:10.21105/joss.00684> and <doi:10.1016/j.fsigen.2018.10.004>).
Last updated 6 months ago
1.18 score 28 dependenciescaracas - Computer Algebra
Computer algebra via the 'SymPy' library (<https://www.sympy.org/>). This makes it possible to solve equations symbolically, find symbolic integrals, symbolic sums and other important quantities.
Last updated 6 months ago
23 stars 3.04 score 74 dependencies 1 dependentsdisclapmix - Discrete Laplace Mixture Inference using the EM Algorithm
Make inference in a mixture of discrete Laplace distributions using the EM algorithm. This can e.g. be used for modelling the distribution of Y chromosomal haplotypes as described in [1, 2] (refer to the URL section).
Last updated 11 months ago
0.74 score 5 dependenciesdisclap - Discrete Laplace Exponential Family
The discrete Laplace exponential family for use in fitting generalized linear models.
Last updated 11 months ago
1.03 score 0 dependencies 1 dependentsRyacas - R Interface to the 'Yacas' Computer Algebra System
Interface to the 'yacas' computer algebra system (<http://www.yacas.org/>).
Last updated 1 years ago
33 stars 3.83 score 2 dependencies 14 dependentsRyacas0 - Legacy 'Ryacas' (Interface to 'Yacas' Computer Algebra System)
A legacy version of 'Ryacas', an interface to the 'yacas' computer algebra system (<http://www.yacas.org/>).
Last updated 1 years ago
2 stars 2.03 score 5 dependencies 5 dependentsroxytest - Various Tests with 'roxygen2'
Various tests as 'roxygen2' roclets: e.g. 'testthat' and 'tinytest' tests. Also other static analysis tools as checking parameter documentation consistency and others.
Last updated 1 years ago
94 stars 4.05 score 29 dependencies