Ryacas - R Interface to the 'Yacas' Computer Algebra System

Interface to the 'yacas' computer algebra system (<http://www.yacas.org/>).

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cpp

10.42 score 43 stars 9 dependents 196 scripts 6.6k downloads

caracas - Computer Algebra

Computer algebra via the 'SymPy' library (<https://www.sympy.org/>). This makes it possible to solve equations symbolically, find symbolic integrals, symbolic sums and other important quantities.

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8.74 score 31 stars 1 dependents 108 scripts 574 downloads

roxytest - Various Tests with 'roxygen2'

Various tests as 'roxygen2' roclets: e.g. 'testthat' and 'tinytest' tests. Also other static analysis tools as checking parameter documentation consistency and others.

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6.17 score 98 stars 3 scripts 265 downloads

DNAtools - Tools for Analysing Forensic Genetic DNA Data

Computationally efficient tools for comparing all pairs of profiles in a DNA database. The expectation and covariance of the summary statistic is implemented for fast computing. Routines for estimating proportions of close related individuals are available. The use of wildcards (also called F- designation) is implemented. Dedicated functions ease plotting the results. See Tvedebrink et al. (2012) <doi:10.1016/j.fsigen.2011.08.001>. Compute the distribution of the numbers of alleles in DNA mixtures. See Tvedebrink (2013) <doi:10.1016/j.fsigss.2013.10.142>.

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cpp

6.02 score 29 scripts 306 downloads

malan - MAle Lineage ANalysis

MAle Lineage ANalysis by simulating genealogies backwards and imposing short tandem repeats (STR) mutations forwards. Intended for forensic Y chromosomal STR (Y-STR) haplotype analyses. Numerous analyses are possible, e.g. number of matches and meiotic distance to matches. Refer to papers mentioned in citation("malan") (DOI's: <doi:10.1371/journal.pgen.1007028>, <doi:10.21105/joss.00684> and <doi:10.1016/j.fsigen.2018.10.004>).

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openblascpp

4.48 score 6 scripts 228 downloads

disclapmix - Discrete Laplace Mixture Inference using the EM Algorithm

Make inference in a mixture of discrete Laplace distributions using the EM algorithm. This can e.g. be used for modelling the distribution of Y chromosomal haplotypes as described in [1, 2] (refer to the URL section).

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cpp

4.38 score 16 scripts 258 downloads

disclap - Discrete Laplace Exponential Family

The discrete Laplace exponential family for use in fitting generalized linear models.

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3.18 score 1 dependents 3 scripts 322 downloads