Package: disclapmix 1.7.4.9910
disclapmix: Discrete Laplace Mixture Inference using the EM Algorithm
Make inference in a mixture of discrete Laplace distributions using the EM algorithm. This can e.g. be used for modelling the distribution of Y chromosomal haplotypes as described in [1, 2] (refer to the URL section).
Authors:
disclapmix_1.7.4.9910.tar.gz
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disclapmix.pdf |disclapmix.html✨
disclapmix/json (API)
NEWS
| # Install 'disclapmix' in R: |
| install.packages('disclapmix', repos = c('https://mikldk.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/mikldk/disclapmix/issues
- danes - Y-STR haplotypes
Last updated 1 years agofrom:4ea80a3520. Checks:OK: 1 WARNING: 8. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Oct 01 2024 |
| R-4.5-win-x86_64 | WARNING | Oct 01 2024 |
| R-4.5-linux-x86_64 | WARNING | Oct 01 2024 |
| R-4.4-win-x86_64 | WARNING | Oct 01 2024 |
| R-4.4-mac-x86_64 | WARNING | Oct 01 2024 |
| R-4.4-mac-aarch64 | WARNING | Oct 01 2024 |
| R-4.3-win-x86_64 | WARNING | Oct 01 2024 |
| R-4.3-mac-x86_64 | WARNING | Oct 01 2024 |
| R-4.3-mac-aarch64 | WARNING | Oct 01 2024 |
Exports:clusterdistclusterprobcontributor_pairsdisclapmixdisclapmix_adaptivedisclapmix_robustgenerate_mixtureget_rankrank_contributor_pairs
Dependencies:clusterdisclapMASSRcppRcppProgress
Adaptive fitting
Rendered fromadaptive-fitting.Rmdusingknitr::rmarkdownon Oct 01 2024.Last update: 2022-12-19
Started: 2022-07-08
Introduction
Rendered fromintroduction.Rmdusingknitr::rmarkdownon Oct 01 2024.Last update: 2022-06-30
Started: 2018-04-20
Mixtures
Rendered frommixtures.Rmdusingknitr::rmarkdownon Oct 01 2024.Last update: 2019-01-09
Started: 2018-04-22
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| disclapmix | disclapmix-package |
| Calculate distance between clusters | clusterdist |
| Cluster origin probabilities for haplotypes | clusterprob |
| Contributor pairs from a 2 person mixture | contributor_pairs |
| Y-STR haplotypes | danes |
| Discrete Laplace mixture inference using the EM algorithm | disclapmix disclapmixfit |
| Adaptive fitting | disclapmix_adaptive |
| Robust fitting | disclapmix_robust |
| Generate a mixture | generate_mixture |
| Get rank of pair | get_rank |
| Calculate haplotype diversity from a disclapmixfit | haplotype_diversity |
| Plot a disclapmixfit | plot.disclapmixfit |
| Plot ranked contributor pairs | plot.ranked_contrib_pairs |
| Predict from a disclapmixfit | predict.disclapmixfit |
| Print contributor pairs | print.contrib_pairs |
| Print a disclapmixfit | print.disclapmixfit |
| Print ranked contributor pairs | print.ranked_contrib_pairs |
| Separate a 2 person mixture | rank_contributor_pairs |
| Simulate from a disclapmixfit | simulate.disclapmixfit |
| Summary of a disclapmixfit | summary.disclapmixfit |
