Package: disclapmix 1.7.5

disclapmix: Discrete Laplace Mixture Inference using the EM Algorithm

Make inference in a mixture of discrete Laplace distributions using the EM algorithm. This can e.g. be used for modelling the distribution of Y chromosomal haplotypes as described in [1, 2] (refer to the URL section).

Authors:Mikkel Meyer Andersen [aut, cre], Poul Svante Eriksen [aut]

disclapmix_1.7.5.tar.gz
disclapmix_1.7.5.zip(r-4.7)disclapmix_1.7.5.zip(r-4.6)disclapmix_1.7.5.zip(r-4.5)
disclapmix_1.7.5.tgz(r-4.6-x86_64)disclapmix_1.7.5.tgz(r-4.6-arm64)disclapmix_1.7.5.tgz(r-4.5-x86_64)disclapmix_1.7.5.tgz(r-4.5-arm64)
disclapmix_1.7.5.tar.gz(r-4.7-arm64)disclapmix_1.7.5.tar.gz(r-4.7-x86_64)disclapmix_1.7.5.tar.gz(r-4.6-arm64)disclapmix_1.7.5.tar.gz(r-4.6-x86_64)
disclapmix_1.7.5.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
disclapmix/json (API)
NEWS

# Install 'disclapmix' in R:

install.packages('disclapmix', repos = c('https://mikldk.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/mikldk/disclapmix/issues

Uses libs:

c++– GNU Standard C++ Library v3

Datasets:

danes - Y-STR haplotypes

On CRAN:

cpp

4.38 score 16 scripts 258 downloads 10 exports 5 dependencies

Last updated from:dc25dbcf6c. Checks:13 OK. Indexed: yes.

Target	Result	Time
linux-devel-arm64	OK	142
linux-devel-x86_64	OK	154
source / vignettes	OK	231
linux-release-arm64	OK	143
linux-release-x86_64	OK	144
macos-release-arm64	OK	91
macos-release-x86_64	OK	273
macos-oldrel-arm64	OK	95
macos-oldrel-x86_64	OK	184
windows-devel	OK	126
windows-release	OK	121
windows-oldrel	OK	131
wasm-release	OK	124

Exports:clusterdist clusterprob contributor_pairs disclapmix disclapmix_adaptive disclapmix_robust export_compact_fit generate_mixture get_rank rank_contributor_pairs

Dependencies:cluster disclap MASS Rcpp RcppProgress

Adaptive fitting

Rendered fromadaptive-fitting.Rmdusingknitr::rmarkdownon May 09 2026.

Last update: 2022-12-19
Started: 2022-07-08

Introduction

Mikkel Meyer Andersen

Rendered fromintroduction.Rmdusingknitr::rmarkdownon May 09 2026.

Last update: 2022-06-30
Started: 2018-04-20

Mixtures

Mikkel Meyer Andersen

Rendered frommixtures.Rmdusingknitr::rmarkdownon May 09 2026.

Last update: 2019-01-09
Started: 2018-04-22

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
disclapmix	disclapmix-package
Calculate distance between clusters	clusterdist
Cluster origin probabilities for haplotypes	clusterprob
Contributor pairs from a 2 person mixture	contributor_pairs
Y-STR haplotypes	danes
Discrete Laplace mixture inference using the EM algorithm	disclapmix disclapmixfit
Adaptive fitting	disclapmix_adaptive
Robust fitting	disclapmix_robust
Export model fit to compact format	export_compact_fit
Generate a mixture	generate_mixture
Get rank of pair	get_rank
Calculate haplotype diversity from a disclapmixfit	haplotype_diversity
Plot a disclapmixfit	plot.disclapmixfit
Plot ranked contributor pairs	plot.ranked_contrib_pairs
Predict from a disclapmixfit	predict.disclapmixfit
Print contributor pairs	print.contrib_pairs
Print a disclapmixfit	print.disclapmixfit
Print ranked contributor pairs	print.ranked_contrib_pairs
Separate a 2 person mixture	rank_contributor_pairs
Simulate from a disclapmixfit	simulate.disclapmixfit
Summary of a disclapmixfit	summary.disclapmixfit