Package: fwsim 0.3.4

fwsim: Fisher-Wright Population Simulation

Simulates a population under the Fisher-Wright model (fixed or stochastic population size) with a one-step neutral mutation process (stepwise mutation model, logistic mutation model and exponential mutation model supported). The stochastic population sizes are random Poisson distributed and different kinds of population growth are supported. For the stepwise mutation model, it is possible to specify locus and direction specific mutation rate (in terms of upwards and downwards mutation rate). Intermediate generations can be saved in order to study e.g. drift.

Authors:Mikkel Meyer Andersen and Poul Svante Eriksen

fwsim_0.3.4.tar.gz
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fwsim.pdf |fwsim.html
fwsim/json (API)
NEWS

# Install 'fwsim' in R:
install.packages('fwsim', repos = c('https://mikldk.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Uses libs:
  • c++– GNU Standard C++ Library v3

On CRAN:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

1.00 score 4 scripts 260 downloads 1 mentions 11 exports 1 dependencies

Last updated 6 years agofrom:38059a335a. Checks:OK: 1 NOTE: 8. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 16 2024
R-4.5-win-x86_64NOTENov 16 2024
R-4.5-linux-x86_64NOTENov 16 2024
R-4.4-win-x86_64NOTENov 16 2024
R-4.4-mac-x86_64NOTENov 16 2024
R-4.4-mac-aarch64NOTENov 16 2024
R-4.3-win-x86_64NOTENov 16 2024
R-4.3-mac-x86_64NOTENov 16 2024
R-4.3-mac-aarch64NOTENov 16 2024

Exports:approx_stationary_distfwsimfwsim_fixedinit_mutmodelmutmodel_dw_mutmutmodel_not_mutmutmodel_up_mutplot.fwsimprint.fwsimprint.mutmodelsummary.fwsim

Dependencies:Rcpp

Readme and manuals

Help Manual

Help pageTopics
Haplotype toolsfwsim-package
Fisher-Wright Population Simulationfwsim fwsim_fixed plot.fwsim print.fwsim summary.fwsim
init_mutmodelinit_mutmodel print.mutmodel
Mutation model logicapprox_stationary_dist mutmodel_dw_mut mutmodel_not_mut mutmodel_up_mut